prisma v8.2.0 for windows Search Results


cgmlst program ridom seqsphere  (Ridom GmbH)
90
Ridom GmbH cgmlst program ridom seqsphere
Core genome MLST (cgMLST)-based genetic relatedness between 29 MCR1-EC isolates from South Korea. Data comprise 12 intestinal pathogenic MCR1-EC strains isolated in this study and 17 MCR1-EC strains isolated from South Korea, published in the National Center for Biotechnology Information (NCBI) GenBank database. The phylogenetic tree based on cgMLST was constructed using the neighbor-joining algorithm with default parameters implemented in the Ridom <t>SeqSphere+</t> program (v8.2.0). The color of shades corresponds to each clone type. The contents of shades include, from left to right, the assembly accession number, host, isolation date, clone type, and data source (this study or NCBI database) for each strain. Four clusters consist of MCR1-EC strains with a relatedness distance value less than 0.01. MCR1-EC, Escherichia coli carrying the mobilized colistin resistance gene mcr-1.1 ; MLST, multi-locus sequence typing.
Cgmlst Program Ridom Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/prisma+v8%2E2%2E0+for+windows/cgmlst+scheme+ridom+seqsphere/pmc09121016-144-6-6
Average 90 stars, based on 1 article reviews
cgmlst program ridom seqsphere - by Bioz Stars, 2026-08
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seqsphere+ tm  (Ridom GmbH)
90
Ridom GmbH seqsphere+ tm
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Seqsphere+ Tm, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/prisma+v8%2E2%2E0+for+windows/seqsphere/pmc09854998-258-13-12
Average 90 stars, based on 1 article reviews
seqsphere+ tm - by Bioz Stars, 2026-08
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algorithms flowjo v10 6 2 tree star  (Tree Star Inc)
86
Tree Star Inc algorithms flowjo v10 6 2 tree star
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Algorithms Flowjo V10 6 2 Tree Star, supplied by Tree Star Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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algorithms flowjo v10 6 2 tree star - by Bioz Stars, 2026-08
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s-plus  (RStudio)
90
RStudio s-plus
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
S Plus, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
s-plus - by Bioz Stars, 2026-08
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imaris software v8 2 0  (Oxford Instruments)
99
Oxford Instruments imaris software v8 2 0
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Imaris Software V8 2 0, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/prisma+v8%2E2%2E0+for+windows/Imaris/pmc05340337-113-14-17
Average 99 stars, based on 1 article reviews
imaris software v8 2 0 - by Bioz Stars, 2026-08
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one-way anova implemented in medcalc for windows, v. 8.2.0.1  (MedCalc Software Ltd)
90
MedCalc Software Ltd one-way anova implemented in medcalc for windows, v. 8.2.0.1
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
One Way Anova Implemented In Medcalc For Windows, V. 8.2.0.1, supplied by MedCalc Software Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
one-way anova implemented in medcalc for windows, v. 8.2.0.1 - by Bioz Stars, 2026-08
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medcalc v8.2.0.1  (MedCalc Software Ltd)
90
MedCalc Software Ltd medcalc v8.2.0.1
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Medcalc V8.2.0.1, supplied by MedCalc Software Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/prisma+v8%2E2%2E0+for+windows/medcalc+9+0+1/pm17394965-57-92-102
Average 90 stars, based on 1 article reviews
medcalc v8.2.0.1 - by Bioz Stars, 2026-08
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pvm system software v8.2.0  (METTLER TOLEDO)
90
METTLER TOLEDO pvm system software v8.2.0
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Pvm System Software V8.2.0, supplied by METTLER TOLEDO, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pvm system software v8.2.0 - by Bioz Stars, 2026-08
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software windows v.8.2.0.3  (MedCalc Software Ltd)
90
MedCalc Software Ltd software windows v.8.2.0.3
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Software Windows V.8.2.0.3, supplied by MedCalc Software Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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software windows v.8.2.0.3 - by Bioz Stars, 2026-08
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pclamp software  (Danaher Inc)
96
Danaher Inc pclamp software
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Pclamp Software, supplied by Danaher Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pclamp software - by Bioz Stars, 2026-08
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v 8 2 0 37 software  (STATA Corporation)
99
STATA Corporation v 8 2 0 37 software
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
V 8 2 0 37 Software, supplied by STATA Corporation, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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custom shape roi tool within the pacs  (Agfa HealthCare)
90
Agfa HealthCare custom shape roi tool within the pacs
( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ <t>SeqSphere+</t> (v. 8.2.0) .
Custom Shape Roi Tool Within The Pacs, supplied by Agfa HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Core genome MLST (cgMLST)-based genetic relatedness between 29 MCR1-EC isolates from South Korea. Data comprise 12 intestinal pathogenic MCR1-EC strains isolated in this study and 17 MCR1-EC strains isolated from South Korea, published in the National Center for Biotechnology Information (NCBI) GenBank database. The phylogenetic tree based on cgMLST was constructed using the neighbor-joining algorithm with default parameters implemented in the Ridom SeqSphere+ program (v8.2.0). The color of shades corresponds to each clone type. The contents of shades include, from left to right, the assembly accession number, host, isolation date, clone type, and data source (this study or NCBI database) for each strain. Four clusters consist of MCR1-EC strains with a relatedness distance value less than 0.01. MCR1-EC, Escherichia coli carrying the mobilized colistin resistance gene mcr-1.1 ; MLST, multi-locus sequence typing.

Journal: Frontiers in Microbiology

Article Title: Prevalence, Characteristics, and Clonal Distribution of Escherichia coli Carrying Mobilized Colistin Resistance Gene mcr-1.1 in Swine Farms and Their Differences According to Swine Production Stages

doi: 10.3389/fmicb.2022.873856

Figure Lengend Snippet: Core genome MLST (cgMLST)-based genetic relatedness between 29 MCR1-EC isolates from South Korea. Data comprise 12 intestinal pathogenic MCR1-EC strains isolated in this study and 17 MCR1-EC strains isolated from South Korea, published in the National Center for Biotechnology Information (NCBI) GenBank database. The phylogenetic tree based on cgMLST was constructed using the neighbor-joining algorithm with default parameters implemented in the Ridom SeqSphere+ program (v8.2.0). The color of shades corresponds to each clone type. The contents of shades include, from left to right, the assembly accession number, host, isolation date, clone type, and data source (this study or NCBI database) for each strain. Four clusters consist of MCR1-EC strains with a relatedness distance value less than 0.01. MCR1-EC, Escherichia coli carrying the mobilized colistin resistance gene mcr-1.1 ; MLST, multi-locus sequence typing.

Article Snippet: The cgMLST was performed using the Ridom SeqSphere+ program (v8.2.0; ).

Techniques: Isolation, Construct, Sequencing

Core genome multi-locus sequence typing-based genetic relatedness of 82 ST10-A MCR1-EC strains isolated from humans, pigs, and chickens worldwide. Strains were derived from the NCBI GenBank database. The phylogenetic tree based on cgMLST was constructed using the neighbor-joining algorithm with default parameters implemented in the Ridom SeqSphere+ program (v8.2.0). The shaded color corresponds to the country where the strain was isolated. The contents of shades include, from left to right, the assembly accession number, host, isolation date, isolation country, and data source (this study or NCBI database) for each strain. Five clusters consist of MCR1-EC isolates with a relatedness distance value of less than 0.01. MCR1-EC, Escherichia coli carrying the mobilized colistin resistance gene mcr-1.1 ; cgMLST, core genome multi-locus sequence typing.

Journal: Frontiers in Microbiology

Article Title: Prevalence, Characteristics, and Clonal Distribution of Escherichia coli Carrying Mobilized Colistin Resistance Gene mcr-1.1 in Swine Farms and Their Differences According to Swine Production Stages

doi: 10.3389/fmicb.2022.873856

Figure Lengend Snippet: Core genome multi-locus sequence typing-based genetic relatedness of 82 ST10-A MCR1-EC strains isolated from humans, pigs, and chickens worldwide. Strains were derived from the NCBI GenBank database. The phylogenetic tree based on cgMLST was constructed using the neighbor-joining algorithm with default parameters implemented in the Ridom SeqSphere+ program (v8.2.0). The shaded color corresponds to the country where the strain was isolated. The contents of shades include, from left to right, the assembly accession number, host, isolation date, isolation country, and data source (this study or NCBI database) for each strain. Five clusters consist of MCR1-EC isolates with a relatedness distance value of less than 0.01. MCR1-EC, Escherichia coli carrying the mobilized colistin resistance gene mcr-1.1 ; cgMLST, core genome multi-locus sequence typing.

Article Snippet: The cgMLST was performed using the Ridom SeqSphere+ program (v8.2.0; ).

Techniques: Sequencing, Isolation, Derivative Assay, Construct

( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ SeqSphere+ (v. 8.2.0) .

Journal: Antibiotics

Article Title: Clostridioides difficile in South American Camelids in Germany: First Insights into Molecular and Genetic Characteristics and Antimicrobial Resistance

doi: 10.3390/antibiotics12010086

Figure Lengend Snippet: ( a ) Results of core genome multi locus sequence typing (cgMLST) of C. difficile isolates. Numbers next to the branches indicate numbers of allelic differences in the core genome. In brackets, the number of SNPs within the core genome is indicated. cgMLST classified the eight isolates into five genetic groups. Three isolates were singletons, while the other five isolates were grouped into two clusters (marked in grey) with two and three isolates, respectively. Each node represents a cgMLST sequence type (cgST) which was coloured according to their ST (classical MLST) classification. ( b ) Geographic origin (according to postal code) of the corresponding samples to the isolates. 19S0160 and 19S0161 (green; RT 015) originated from the same husbandry. RT 002/2 isolates (19S0260, 19S0162, 19S0264; red) originated from husbandries in Saxony-Anhalt which were close to each other, as did 19S0266 (purple; RT 029). 19S0136 (blue; RT 078) originated from a husbandry in Saxony. Figures were created with Ridom™ SeqSphere+ (v. 8.2.0) .

Article Snippet: All tools were used with default settings. cgMLST analysis was done with Ridom SeqSphere+ ™(v. 8.2.0) [ ].

Techniques: Sequencing